Bioinformatics
Introduction to Bioinformatics Tools for HPC
Workshop Outline
What is bioinformatics? Types of bioinformatics analyses Databases Sequencing technologies File formats HPC overview - loading modules Software demos: FastQC - quality control Cutadapt - cleaning data Bowtie2 - alignment Samtools - format conversion PacBio SMRTools Future Directions
Working with Genomic Data on HPC
This tutorial introduces tools and resources for performing genome assembly and analysis with HPC.
Using Bioinformatics Tools on Rivanna
This tutorial is an introduction to using several popular bioinformatics tools on Rivanna.
Biopython
An introduction to using the Biopython package to develop Python scripts for bioinformatics analysis.
Bioinformatics Data Visualization with Seurat
This tutorial is a step-by-step walkthrough of the Seurat workflow for single-cell RNA-seq analysis.
Introduction to QIIME 2
This tutorial is an introduction to using QIIME 2 for micribiome analysis.
Introduction to Bioinformatics Tools for HPC
An introduction to bioinformatics concepts, sequencing technologies, common analysis tools, and their use on high-performance computing systems.