Outputs
After running AlphaFold, your output directory will include a mix of files from different sources:
- The
.csv
,.txt
, and.png
files are generated by AlphaPickle. .pdf
files typically come from the sequence_coverage_plot_fxn.py script.- All other files — including
.pdb
,.pkl
,.json
, and themsas/
directory — are outputs from base AlphaFold.
Files labeled
ranked_0
represent the best-ranked model based on AlphaFold’s internal confidence scoring.
