CSV Outputs - alphapickle
AlphaPickle generates CSV files that can be used for downstream analysis and plotting.
PAE.csv

PAE.csv
is an n_residue
x n_residue
matrix that is used for generating PAE heatmaps.
pLDDT.csv

pLDDT.csv
is an n_residue
-long list which is helpful for generating pLDDT plots.
You can use these files to generate your own custom plots! Try Python, R, or your favorite plotting method.