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Bioinformatics Data Visualization with Seurat
Single-Cell RNA Sequencing
10X Genomics Pipeline
Intro to Seurat
Interactive Workshop
OOD RStudio Server
Loading Seurat
Data Access & Loading
Preprocessing/QC
Filter & Normalize
Identify Highly Variable Features
Scale the Data
Linear Dimension Reduction (PCA)
Visualize PCA Results
Determine Dimensionality
Clustering Analysis
Non-Linear Dimensionality Reduction (UMAP)
Differential Expression
Visualize Expression Across Clusters
Known Biomarkers
Modifying Plots
Recap
Interactive Workshop
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Intro to Seurat
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OOD RStudio Server
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